This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000N0R6.1

USA/LOC_000N0R6.1/2025-06-30
P. Dykema, N. Hanson, Q. Yang, D. Lucas, S. Jr. Grimmet, J. Johnson & K. Waterman

Washington State Department of Health Public Health Labs, Division of Disease Control and Statistics

Sample details

Collection date
2025-06-30
Earliest release date
2026-04-14
Sampling location
USA (Washington)
Isolate name
WNV/USA/WAPHL-339097/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-18 10:09insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-04-14
NCBI update date
2026-04-14
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
PZ260029.1
Submitting group
Date submitted
2026-05-18 10:09:49 UTC
Date released
2026-05-18 11:06:41 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
112
Length
10814 (98.1%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:S348A
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:S467L
  • NS3:L586F
  • NS3:D613E
  • NS4A:V85T
  • NS4B:S28G
  • NS4B:V51I
  • NS4B:A205V
  • NS5:K177R
  • NS5:K314R
  • env:N47K
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G222T
  • C561T
  • A630G
  • A654G
  • C660T
  • C966T
  • A1023G
  • A1044G
  • C1047T
  • T1107A
  • A1320G
  • T1442C
  • C1449T
  • C1465T
  • C1473T
  • C1599T
  • T1638C
  • T1762C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:S348A

NS3

  • NS3:S467L
  • NS3:L586F
  • NS3:D613E

NS4A

  • NS4A:A85T

NS4B

  • NS4B:S28G
  • NS4B:V51I
  • NS4B:A205V

NS5

  • NS5:K314R

env

  • env:N47K
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue